Add a comment. Active Oldest Votes. This will print the abstract: from Bio. Karol Karol 1, 1 1 gold badge 12 12 silver badges 20 20 bronze badges. That looks like a very nice module. I had no idea it existed. However, one good thing about my code is that it obtains DOI values so that the URL retrieved is as general as possible. I'm assuming that such features might exist in the Entrez module, but I haven't looked in depth at it.
I'm not sure what you mean by URL It's okay. My application produces the ' dx. Instead of going to the PubMed stuff, I want to go directly to the article.
The most general way I know of right now that is programmer friendly is to use the DOI schema. Oh I see, but that is orthogonal to this question.
If you have the DOI, you can always build the string " dx. The question was how to get data from Pubmed. Indeed, Karol. However, I needed to get specific details about an article, and PubMed offers a consistent format that I can utilize to obtain that information.
Otherwise, I would have to figure out where that specific information is located on each unique doi page, which is usually different from the next. Show 2 more comments. Wow, I was working on a similar project myself just a week or so ago! Here is the template. Bobort Bobort 2, 27 27 silver badges 39 39 bronze badges. Thank you Bobort, I am going to tweak this code so that it just gets the abstract info. Also, I'll be integrating this with another script which maps the pubmed id to the structural title and the citation title.
Why did I get a down vote? How unhelpful to just down vote an answer and leave! Hi Bobort, I think someone else has down voted the answer. Franck Dernoncourt Franck Dernoncourt Sign up or log in Sign up using Google. Sign up using Facebook. Sign up using Email and Password. Post as a guest Name. Email Required, but never shown.
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